miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|161517245|gb|EY897188.1|EY897188 GGGTGGATAGAGAAGGCGCAGGGAAACACATTGAAGCTGGAGCCAAGAAGGTTATCATTACAGCTCCAGGCAAAGGAGAC
ATCCTAACTTATGTTGTTGGTGTCAACGCCGATGCTTACAATCCTGATGAACCGATCATCAGCAATGCTTCTTGCACTAC
TAACTGTCTTGCTCCCTTTGTCAAAGTTCTAGACCAGAAGTTCGGTATCATAAAGGGTACAATGACAACTACTCACTCAT
ACACCGGTGACCAGAGGTTACTAGACGCTAGCCACCGTGATCTAAGGAGAGCAAGAGCAGCTGCTTTGAACATTGTTCCC
ACATCTACAGGAGCAGCCAAAGCAGTGGCTCTTGTGCTCCCTAACCTCAAAGGAAAACTCAACGGAATAGCTCTCCGTGT
GCCGACACCAAATGTCTCAGTGGTTGATCTCGTTGTGCAGGTCACCAAGAAGACTTTTGCAGAGGAAGTTAACGCTGCTT
TCAGAGACTCTGCAGAGAAAGAGCTTAAAGGTATCCTCGAAGTCTGCGATGAGCCGCTTGTGTCAGTTGATTTCAGATGC
TCGGATGTGTCGTCCACCATTGATTCTTCACTCACTATGGTGATGGGAGATGATATGGTTAAGGTGATTGCTTGGTATGA
TAATGAATGGGGTTACTCACAGAGAGTTGTTGATCTCGCTGGCATTGTTGC




Most similar to sp|P25856|G3PA_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P25856|G3PA_ARATH Glyceraldehyde-3-phosphate dehydrogenase A,
           chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3
          Length = 396

 Score =  395 bits (1015), Expect = e-109
 Identities = 203/229 (88%), Positives = 207/229 (90%)
 Frame = +3

Query: 3   VDREGAGKHIEAGAKKVIITAPGKGDILTYVVGVNADAYNPDEPIISNASCTTNCLAPFV 182
           VDREGAGKHIEAGAKKVIITAPGKGDI TYVVGVNADAY+ DEPIISNASCTTNCLAPFV
Sbjct: 163 VDREGAGKHIEAGAKKVIITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFV 222

Query: 183 KVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVALVLP 362
           KVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTSTGAAKAVALVLP
Sbjct: 223 KVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLP 282

Query: 363 NLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFRDSAEKELKGILEVCDEPLV 542
           NLKGKLNGIALRVPTPNVSVVDLVVQV+KKTFAEEVNAAFRDSAEKELKGIL+VCDEPLV
Sbjct: 283 NLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLV 342

Query: 543 SVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLAGIV 689
           SVDFRCSD S+TIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLA IV
Sbjct: 343 SVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIV 391